Index

A

activation_coefficient (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters) activity (class in bone_models.bone_cell_population_models.parameters.martonova_parameters) analyse_effect_of_different_pulse_characteristics() (in module bone_models.bone_cell_population_models.models.modiz_model) apoptosis_rate (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters)

apply_mechanical_effects() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) apply_medication_effects_OBa() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) apply_medication_effects_OBp() (bone_models.bone_cell_population_models.models.base_model.Base_Model method)

B

Basal_PTH_pulse (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) basal_PTH_pulse (class in bone_models.bone_cell_population_models.parameters.martonova_parameters) Base_Model (class in bone_models.bone_cell_population_models.models.base_model) Base_Parameters (class in bone_models.bone_cell_population_models.parameters.base_parameters) binding_constant (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters) bone_cell_population_model() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) bone_models module, [1] bone_models.bone_cell_population_models.load_cases.lemaire_load_cases module bone_models.bone_cell_population_models.load_cases.martinez_reina_load_cases module bone_models.bone_cell_population_models.load_cases.martonova_load_cases module bone_models.bone_cell_population_models.load_cases.modiz_load_cases module bone_models.bone_cell_population_models.load_cases.pivonka_load_cases module bone_models.bone_cell_population_models.load_cases.scheiner_load_cases module bone_models.bone_cell_population_models.models.base_model module bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1 module bone_models.bone_cell_population_models.models.lemaire_model module bone_models.bone_cell_population_models.models.lerebours_model module bone_models.bone_cell_population_models.models.martinez_reina_model module bone_models.bone_cell_population_models.models.martonova_model module bone_models.bone_cell_population_models.models.modiz_model module bone_models.bone_cell_population_models.models.pivonka_model module bone_models.bone_cell_population_models.models.scheiner_model module

bone_models.bone_cell_population_models.parameters.base_parameters module bone_models.bone_cell_population_models.parameters.lemaire_parameters module bone_models.bone_cell_population_models.parameters.lerebours_parameters module bone_models.bone_cell_population_models.parameters.martinez_reina_parameters module bone_models.bone_cell_population_models.parameters.martonova_parameters module bone_models.bone_cell_population_models.parameters.modiz_parameters module bone_models.bone_cell_population_models.parameters.pivonka_parameters module bone_models.bone_cell_population_models.parameters.scheiner_parameters module bone_models.bone_cell_population_models.utils module bone_models.bone_mineralisation_models.load_cases.modiz_load_cases module bone_models.bone_mineralisation_models.load_cases.ruffoni_load_cases module bone_models.bone_mineralisation_models.models.modiz_model module bone_models.bone_mineralisation_models.models.ruffoni_model module bone_models.bone_mineralisation_models.parameters.modiz_parameters module bone_models.bone_mineralisation_models.parameters.ruffoni_parameters module bone_models.bone_spatial_models.load_cases.lerebours_load_cases module bone_models.bone_spatial_models.models.lerebours_model module bone_models.bone_spatial_models.parameters.lerebours_parameters module bone_volume (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters) (class in bone_models.bone_mineralisation_models.parameters.modiz_parameters) Bone_Volume (class in bone_models.bone_mineralisation_models.parameters.ruffoni_parameters)

C

Calcium (class in bone_models.bone_mineralisation_models.parameters.ruffoni_parameters) calculate_activity_constants() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_activity_constants_for_basal() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_activity_constants_for_basal_and_injection() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_adaptation_time() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_ash_fraction() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) calculate_average_mineral_content() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) calculate_basal_activity() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_bone_volume() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) calculate_bone_volume_fraction_change() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) calculate_cellular_activity() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_cellular_responsiveness() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_compliance_matrix() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) calculate_contribution_of_receptor_desensitation() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_contribution_of_receptor_resensitisation() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_denosumab_concentration() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) calculate_desensitised_receptors_after_adaptation() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_difference_in_receptor_fraction() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_difference_in_weights() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_drug_PTH_pulse() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_effective_carrying_capacity_RANKL() (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_elevation_parameter() (in module bone_models.bone_cell_population_models.models.modiz_model) calculate_error_for_turnover() (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) calculate_external_injection_OBa() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) calculate_external_injection_OBp() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) calculate_external_injection_OCa() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) calculate_external_injection_OPG() (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) calculate_external_injection_PTH() (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) calculate_external_injection_RANKL() (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) calculate_external_injection_TGFb() (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_formation_rate() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) calculate_hill_tensor_cylindrical_inclusion() (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_integrated_activity() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_integrated_activity_for_step_increase() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_macroscopic_stiffness_tensor() (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_macroscopic_strain_tensor() (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_macroscopic_stress_vector() (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_MCSF_activation_OCu() (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) calculate_microscopic_strain_tensor() (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_mineral_apposition_rate() (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) calculate_mineral_densities() (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) calculate_mineral_queue() (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) calculate_mineralisation_law() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) calculate_normal_force_center() (bone_models.bone_spatial_models.models.lerebours_model.Lerebours_Model method) calculate_OPG_concentration() (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_PTH_activation_OB() (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) (bone_models.bone_cell_population_models.models.modiz_model.Modiz_Model method) (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_PTH_concentration() (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) (bone_models.bone_cell_population_models.models.modiz_model.Reference_Lemaire_Model method)

calculate_PTH_concentration_from_basal() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_PTH_concentration_from_basal_and_injected() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_PTH_repression_OB() (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_RANKL_activation_OCp() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_RANKL_activation_OCu() (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) calculate_RANKL_concentration() (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_RANKL_RANK_concentration() (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_receptor_complex_concentrations() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_resorption_rate() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) calculate_second_moments_of_area() (bone_models.bone_spatial_models.models.lerebours_model.Lerebours_Model method) calculate_steady_state() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) calculate_stiffness_for_all_RVEs() (bone_models.bone_spatial_models.models.lerebours_model.Lerebours_Model method) calculate_strain_concentration_tensors() (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_strain_decomposition() (bone_models.bone_spatial_models.models.lerebours_model.Lerebours_Model method) calculate_strain_effect_on_OBp() (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_strain_energy_density() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_TGFb_activation_OBu() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_TGFb_activation_OCa() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_TGFb_concentration() (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method) calculate_TGFb_repression_OBp() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lemaire_model.Lemaire_Model method) (bone_models.bone_cell_population_models.models.pivonka_model.Pivonka_Model method) calculate_turnover() (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) calculate_weight_active_receptor() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_weight_desensitised_receptor() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) calculate_youngs_modulus() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) calibration (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) Calibration_Parameters (class in bone_models.bone_cell_population_models.parameters.modiz_parameters) Calibration_Parameters_Only_For_Healthy_State (class in bone_models.bone_cell_population_models.parameters.modiz_parameters) check_mass_conservation() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) concentration (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters) correction_factor (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) cross_section (class in bone_models.bone_spatial_models.parameters.lerebours_parameters)

D

degradation_rate (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters)

denosumab (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) differentiation_rate (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters)

E

external_dosage (class in bone_models.bone_cell_population_models.parameters.base_parameters)

F

fit_specific_surface_to_turnover_data() (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method)

I

identify_calibration_parameters() (in module bone_models.bone_cell_population_models.models.modiz_model) identify_calibration_parameters_only_for_healthy_state() (in module bone_models.bone_cell_population_models.models.modiz_model) initialise_ageing_queue() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) initialize_BMDD_from_mineralization_law() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_BMDD_from_reference() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_circular_cross_section() (bone_models.bone_spatial_models.models.lerebours_model.Lerebours_Model method) initialize_double_exponential_mineralization_law() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_double_hyperbolic_mineralization_law() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_elliptical_cross_section() (bone_models.bone_spatial_models.models.lerebours_model.Lerebours_Model method) initialize_formed_bone_volume() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method)

initialize_inverse_mineralization_law() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_inverse_mineralization_law_from_BMDD() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_inverse_mineralization_law_from_mineralization_law() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_mineralization_law() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_mineralization_velocity() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_mineralization_velocity_from_BMDD() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_mineralization_velocity_from_mineralization_law() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_model() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) initialize_steady_state_BMDD() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) injected_PTH_pulse (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) (class in bone_models.bone_cell_population_models.parameters.martonova_parameters)

K

kinematics (class in bone_models.bone_cell_population_models.parameters.martonova_parameters)

L

Lemaire_Load_Case (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Lemaire_Load_Case_1 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases) Lemaire_Load_Case_2 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases) Lemaire_Load_Case_3 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases) Lemaire_Load_Case_4 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases) Lemaire_Load_Case_5 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases) Lemaire_Load_Case_6 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases) Lemaire_Load_Case_7 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases) Lemaire_Load_Case_8 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases)

Lemaire_Load_Case_9 (class in bone_models.bone_cell_population_models.load_cases.lemaire_load_cases) Lemaire_Model (class in bone_models.bone_cell_population_models.models.lemaire_model) Lemaire_Parameters (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) Lerebours_Load_Case_Osteoporosis (class in bone_models.bone_spatial_models.load_cases.lerebours_load_cases) Lerebours_Load_Case_Spaceflight (class in bone_models.bone_spatial_models.load_cases.lerebours_load_cases) Lerebours_Model (class in bone_models.bone_cell_population_models.models.lerebours_model) (class in bone_models.bone_spatial_models.models.lerebours_model) Lerebours_Model_V1 (class in bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1) Lerebours_Parameters (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_spatial_models.parameters.lerebours_parameters)

M

Martinez_Reina_Load_Case (class in bone_models.bone_cell_population_models.load_cases.martinez_reina_load_cases) Martinez_Reina_Model (class in bone_models.bone_cell_population_models.models.martinez_reina_model) Martinez_Reina_Parameters (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) Martonova_Glucocorticoid_Induced_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) Martonova_Healthy (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) Martonova_Hypercalcemia (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) Martonova_Hyperparathyroidism (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) Martonova_Hyperparathyroidism_With_Drug (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) Martonova_Hypocalcemia (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) Martonova_Model (class in bone_models.bone_cell_population_models.models.martonova_model) Martonova_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) Martonova_Parameters (class in bone_models.bone_cell_population_models.parameters.martonova_parameters) Martonova_Postmenopausal_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.martonova_load_cases) mechanics (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters) (class in bone_models.bone_spatial_models.parameters.lerebours_parameters) mineralisation (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_mineralisation_models.parameters.modiz_parameters) Mineralization_Law (class in bone_models.bone_mineralisation_models.parameters.ruffoni_parameters) Modiz_Healthy_to_Glucocorticoid_Induced_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Healthy_to_Hypercalcemia (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Healthy_to_Hyperparathyroidism (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Healthy_to_Hypocalcemia (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Healthy_to_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Healthy_to_Postmenopausal_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Load_Case (class in bone_models.bone_mineralisation_models.load_cases.modiz_load_cases) Modiz_Model (class in bone_models.bone_cell_population_models.models.modiz_model) (class in bone_models.bone_mineralisation_models.models.modiz_model) Modiz_Parameters (class in bone_models.bone_cell_population_models.parameters.modiz_parameters) (class in bone_models.bone_mineralisation_models.parameters.modiz_parameters) Modiz_Reference_Healthy_to_Glucocorticoid_Induced_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Reference_Healthy_to_Hypercalcemia (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Reference_Healthy_to_Hyperparathyroidism (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Reference_Healthy_to_Hypocalcemia (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) Modiz_Reference_Healthy_to_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases)

Modiz_Reference_Healthy_to_Postmenopausal_Osteoporosis (class in bone_models.bone_cell_population_models.load_cases.modiz_load_cases) module bone_models, [1] bone_models.bone_cell_population_models.load_cases.lemaire_load_cases bone_models.bone_cell_population_models.load_cases.martinez_reina_load_cases bone_models.bone_cell_population_models.load_cases.martonova_load_cases bone_models.bone_cell_population_models.load_cases.modiz_load_cases bone_models.bone_cell_population_models.load_cases.pivonka_load_cases bone_models.bone_cell_population_models.load_cases.scheiner_load_cases bone_models.bone_cell_population_models.models.base_model bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1 bone_models.bone_cell_population_models.models.lemaire_model bone_models.bone_cell_population_models.models.lerebours_model bone_models.bone_cell_population_models.models.martinez_reina_model bone_models.bone_cell_population_models.models.martonova_model bone_models.bone_cell_population_models.models.modiz_model bone_models.bone_cell_population_models.models.pivonka_model bone_models.bone_cell_population_models.models.scheiner_model bone_models.bone_cell_population_models.parameters.base_parameters bone_models.bone_cell_population_models.parameters.lemaire_parameters bone_models.bone_cell_population_models.parameters.lerebours_parameters bone_models.bone_cell_population_models.parameters.martinez_reina_parameters bone_models.bone_cell_population_models.parameters.martonova_parameters bone_models.bone_cell_population_models.parameters.modiz_parameters bone_models.bone_cell_population_models.parameters.pivonka_parameters bone_models.bone_cell_population_models.parameters.scheiner_parameters bone_models.bone_cell_population_models.utils bone_models.bone_mineralisation_models.load_cases.modiz_load_cases bone_models.bone_mineralisation_models.load_cases.ruffoni_load_cases bone_models.bone_mineralisation_models.models.modiz_model bone_models.bone_mineralisation_models.models.ruffoni_model bone_models.bone_mineralisation_models.parameters.modiz_parameters bone_models.bone_mineralisation_models.parameters.ruffoni_parameters bone_models.bone_spatial_models.load_cases.lerebours_load_cases bone_models.bone_spatial_models.models.lerebours_model bone_models.bone_spatial_models.parameters.lerebours_parameters

O

objective_function() (in module bone_models.bone_cell_population_models.models.modiz_model)

P

pharmacokinetics (class in bone_models.bone_cell_population_models.parameters.martonova_parameters) pharmacokinetics_pharmocodynamics_denosumab() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) Pivonka_Load_Case_1 (class in bone_models.bone_cell_population_models.load_cases.pivonka_load_cases) Pivonka_Model (class in bone_models.bone_cell_population_models.models.pivonka_model) Pivonka_Parameters (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) PK_PD_model() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) plot_results() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) plot_turnover_fit() (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) PMO (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters)

production_rate (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters) proliferation_rate (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters)

R

Rate (class in bone_models.bone_mineralisation_models.parameters.ruffoni_parameters) receptor_ligand_model() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) Reference_BMDD (class in bone_models.bone_mineralisation_models.parameters.ruffoni_parameters) Reference_Lemaire_Model (class in bone_models.bone_cell_population_models.models.modiz_model) repression_coefficient (class in bone_models.bone_cell_population_models.parameters.base_parameters) (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.lerebours_parameters) (class in bone_models.bone_cell_population_models.parameters.martinez_reina_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters) (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters)

Ruffoni_Load_Case (class in bone_models.bone_mineralisation_models.load_cases.ruffoni_load_cases) Ruffoni_Model (class in bone_models.bone_mineralisation_models.models.ruffoni_model) Ruffoni_Parameters (class in bone_models.bone_mineralisation_models.parameters.ruffoni_parameters)

S

Scheiner_Load_Case (class in bone_models.bone_cell_population_models.load_cases.scheiner_load_cases) Scheiner_Model (class in bone_models.bone_cell_population_models.models.scheiner_model) Scheiner_Parameters (class in bone_models.bone_cell_population_models.parameters.scheiner_parameters) set_macroscopic_stress_tensor() (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) solve_bone_cell_population_model() (bone_models.bone_cell_population_models.models.base_model.Base_Model method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method)

solve_for_activity() (bone_models.bone_cell_population_models.models.martonova_model.Martonova_Model method) solve_for_BMDD() (bone_models.bone_mineralisation_models.models.ruffoni_model.Ruffoni_Model method) solve_for_denosumab_concentration() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) solve_spatial_model() (bone_models.bone_spatial_models.models.lerebours_model.Lerebours_Model method) specific_surface() (bone_models.bone_cell_population_models.models.legacy.lerebours_model_v1.Lerebours_Model_V1 method) (bone_models.bone_cell_population_models.models.lerebours_model.Lerebours_Model method) stiffness_matrix_to_tensor() (bone_models.bone_cell_population_models.models.scheiner_model.Scheiner_Model method)

U

unbinding_constant (class in bone_models.bone_cell_population_models.parameters.lemaire_parameters) (class in bone_models.bone_cell_population_models.parameters.pivonka_parameters)

update_ageing_queue() (bone_models.bone_cell_population_models.models.martinez_reina_model.Martinez_Reina_Model method) (bone_models.bone_mineralisation_models.models.modiz_model.Modiz_Model method) update_stress_tensor() (bone_models.bone_spatial_models.models.lerebours_model.Lerebours_Model method)